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Cheap flight deals from Heraklion to Prague Starting at €55

For as little as €55, you can take your next adventure to Prague without breaking the bank. Choose between one-way and return tickets from Heraklion below.

  • One way
  • Round-trip
      • Cheapest nonstop
        HER09:30
        2h 55m
        Nonstop
        PRG11:25
        Sat, Apr 26|Heraklion - Prague|Smartwings
        €65€71
        9% OFF
        9% OFF
        €71€65

        Choose Smartwings flights from Heraklion to Prague. The one-way direct flight with Smartwings departs from Heraklion International Airport on Sat, Apr 26, arriving at Vaclav Havel Airport. One-way Prices start from €65 including taxes and charges.

      • HER09:30
        2h 55m
        Nonstop
        PRG11:25
        Sat, Apr 19|Heraklion - Prague|Smartwings
        €65€71
        9% OFF
        9% OFF
        €71€65

        Choose Smartwings flights from Heraklion to Prague. The one-way direct flight with Smartwings departs from Heraklion International Airport on Sat, Apr 19, arriving at Vaclav Havel Airport. One-way Prices start from €65 including taxes and charges.

      • HER06:00
        12h 55m
        1 stop
        PRG17:55
        Mon, Apr 7|Heraklion - Prague|Aegean Airlines
        €55€71
        23% OFF
        23% OFF
        €71€55

        Choose Aegean Airlines flights from Heraklion to Prague. The one-way connecting flight with Aegean Airlines departs from Heraklion International Airport on Mon, Apr 7, arriving at Vaclav Havel Airport. One-way Prices start from €55 including taxes and charges.

      • HER09:35
        9h 20m
        1 stop
        PRG17:55
        Wed, Apr 2|Heraklion - Prague|Aegean Airlines
        €55
        €55

        Choose Aegean Airlines flights from Heraklion to Prague. The one-way connecting flight with Aegean Airlines departs from Heraklion International Airport on Wed, Apr 2, arriving at Vaclav Havel Airport. One-way Prices start from €55 including taxes and charges.

      • HER11:35
        7h 20m
        1 stop
        PRG17:55
        Tue, Apr 8|Heraklion - Prague|Aegean Airlines
        €55
        €55

        Choose Aegean Airlines flights from Heraklion to Prague. The one-way connecting flight with Aegean Airlines departs from Heraklion International Airport on Tue, Apr 8, arriving at Vaclav Havel Airport. One-way Prices start from €55 including taxes and charges.

      • HER13:00
        5h 55m
        1 stop
        PRG17:55
        Wed, Apr 9|Heraklion - Prague|Aegean Airlines
        €56
        €56

        Choose Aegean Airlines flights from Heraklion to Prague. The one-way connecting flight with Aegean Airlines departs from Heraklion International Airport on Wed, Apr 9, arriving at Vaclav Havel Airport. One-way Prices start from €56 including taxes and charges.

      • HER15:00
        26h 35m
        1 stop
        PRG16:35
        Mon, Mar 17|Heraklion - Prague|Aegean Airlines
        €61
        €61

        Choose Aegean Airlines flights from Heraklion to Prague. The one-way connecting flight with Aegean Airlines departs from Heraklion International Airport on Mon, Mar 17, arriving at Vaclav Havel Airport. One-way Prices start from €61 including taxes and charges.

      • HER13:55
        20h 5m
        1 stop
        PRG09:00
        Mon, Mar 31|Heraklion - Prague|easyJet
        €64
        €64

        Choose easyJet flights from Heraklion to Prague. The one-way connecting flight with easyJet departs from Heraklion International Airport on Mon, Mar 31, arriving at Vaclav Havel Airport. One-way Prices start from €64 including taxes and charges.

      • HER13:55
        20h 5m
        1 stop
        PRG09:00
        Tue, Apr 1|Heraklion - Prague|easyJet
        €64
        €64

        Choose easyJet flights from Heraklion to Prague. The one-way connecting flight with easyJet departs from Heraklion International Airport on Tue, Apr 1, arriving at Vaclav Havel Airport. One-way Prices start from €64 including taxes and charges.

      • HER08:40
        5h 40m
        1 stop
        PRG13:20
        Wed, Apr 2|Heraklion - Prague|SKY express
        €64
        €64

        Choose SKY express flights from Heraklion to Prague. The one-way connecting flight with SKY express departs from Heraklion International Airport on Wed, Apr 2, arriving at Vaclav Havel Airport. One-way Prices start from €64 including taxes and charges.

      • HER01:00 pm
        3h 5m
        Nonstop
        PRG02:00 pm
        Thu, Feb 27|Heraklion - Prague|Smartwings
        Find More Flights
        Find More Flights

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

Heraklion to Prague flight time & flight schedules

Flight info.
Departure
Arrival
Weekly Schedule

  1. A3301

    Aegean Airlines

    06:00

    HER

    0.8h

    06:50

    ATH

    SMTWTFS
    Search

  2. A3866

    Aegean Airlines

    16:15

    ATH

    2.7h

    17:55

    PRG

    SMTW---

  3. A3303

    Aegean Airlines

    08:10

    HER

    0.8h

    09:00

    ATH

    SMTWTFS
    Search

  4. A3866

    Aegean Airlines

    16:15

    ATH

    2.7h

    17:55

    PRG

    SMTW---

  5. GQ211

    SKY express

    08:40

    HER

    0.8h

    09:30

    ATH

    SMTWTFS
    Search

  6. GQ820

    SKY express

    10:55

    ATH

    2.1h

    12:00

    FCO

    SMTWTFS

  7. W46065

    Wizz Air Malta

    20:20

    FCO

    2.0h

    22:20

    PRG

    SM-WTFS

  8. GQ211

    SKY express

    08:40

    HER

    0.8h

    09:30

    ATH

    SMTWTFS
    Search

  9. GQ830

    SKY express

    13:00

    ATH

    2.6h

    14:35

    MXP

    SMTWTFS

  10. U23905

    easyJet

    15:45

    MXP

    1.5h

    17:15

    PRG

    SMTWTFS

  11. GQ211

    SKY express

    08:40

    HER

    0.8h

    09:30

    ATH

    SMTWTFS
    Search

  12. GQ760

    SKY express

    12:15

    ATH

    2.7h

    13:55

    PRG

    SM-W-F-

  13. GQ561

    SKY express

    10:00

    HER

    1.3h

    11:15

    SKG

    SMTWTFS
    Search

  14. JU547

    Air Serbia

    04:45

    SKG

    1.6h

    05:20

    BEG

    S----F-

  15. JU170

    Air Serbia

    06:35

    BEG

    2.2h

    08:45

    PRG

    SM-WTF-

  16. A3307

    Aegean Airlines

    11:35

    HER

    0.8h

    12:25

    ATH

    SMTWTFS
    Search

  17. A3866

    Aegean Airlines

    16:15

    ATH

    2.7h

    17:55

    PRG

    SMTW---

  18. GQ215

    SKY express

    18:50

    HER

    0.8h

    19:40

    ATH

    SMTWTFS
    Search

  19. GQ606

    SKY express

    21:55

    ATH

    1.8h

    23:40

    LCA

    SMTWTFS

  20. W64599

    Wizz Air

    18:45

    LCA

    3.9h

    21:40

    PRG

    -M-W-F-

  21. A3321

    Aegean Airlines

    21:50

    HER

    0.8h

    22:40

    ATH

    SMTWTFS
    Search

  22. A3864

    Aegean Airlines

    08:55

    ATH

    2.7h

    10:35

    PRG

    ----TFS

  23. A3323

    Aegean Airlines

    23:20

    HER

    0.8h

    00:10

    ATH

    SMTWTFS
    Search

  24. A3864

    Aegean Airlines

    08:55

    ATH

    2.7h

    10:35

    PRG

    ----TFS
Find more flights and airlines

When is the cheapest time to fly from Heraklion to Prague?

Price trend charts are a great way of tracking how much your flights cost in the lead up to departure and can help you choose when to book your tickets. See how prices to Prague from Heraklion have changed and are set to move below.

Displayed prices are calculated based on the cheapest average weekly prices of the corresponding route on Trip.com.

Frequently Asked Questions

  • When are flight tickets from Heraklion (HER) to Prague (PRG) the cheapest?

    Airlines adjust prices for flights from Heraklion to Prague based on the date and time of your booking. By analyzing data from all airlines, on Trip.com, you can find the lowest flight prices on Tuesdays, Wednesdays, and Saturdays.

  • How much do flights from Heraklion (HER) to Prague (PRG) cost?

    According to Trip.com's data, the lowest price is around €414.

  • How long does it take to fly from Heraklion (HER) to Prague (PRG)?

    It takes about 2 hours 50 minutes to fly from Heraklion (HER) to Prague (PRG).

  • What is the transportation method from the main airport to downtown in Prague?

    • The distance from Vaclav Havel Airport to downtown is about 12 km, by taxi about 30 minutes.

  • What time does the earliest flight from Heraklion to Prague depart?

    The earliest flight departs from Heraklion (HER) at 09:30 and arrives in Prague (PRG) at 11:25.

  • What are the most popular airlines that fly from Heraklion (HER) to Prague (PRG)?

    Airlines with flights from Heraklion (HER) to Prague (PRG): Eurowings and Smartwings.

  • What's the most popular airline for non-stop flights from Heraklion (HER) to Prague (PRG)?

    Czech Airlines operates 1 non-stop flights from Heraklion (HER) to Prague (PRG).

  • How many airports are there in Prague (PRG)?

    There are 1 airport(s) near Prague (PRG): Vaclav Havel Airport.

How to find a cheap flight from Heraklion to Prague

If you don’t know some of the key things to look out for when buying flight tickets, prices can often end up sky high or, worse, sold out! We’ve carefully compiled our six most important steps to help ensure you’re getting the best deals when planning your next journey.
1
Being flexible with your dates to get the cheapest Heraklion to Prague ticket.
Tap "Date" on flight search bar to scan through the calender for Heraklion to Prague airfare over next 6 months in 2025. If you would like to fly in next 3 months, it seems the cheapest date is on Sat, Apr 26 at €65 for one-way flights.
2
Compare cheap Heraklion to Prague flight deals from over hundreds of airlines.
Our extensive search allows you to compare prices from over 500 airlines to choose the cheapest flight tickets from Heraklion to Prague. The cheapest airline operating is Smartwings.
3
Set up a Price Alert
By setting up a Price Alert for your Heraklion to Prague route, you can easily track the price of your airline tickets from without manually checking every day.
4
Don't miss cheap Heraklion to Prague flight deals and promo codes.
You can always get the latest deals through Trip.com Deals and Promo Codes for cheap flights. If registering a free membership, you can receive more deals for your flights.
5
Book early or wait unitl the last minute.
It's always better to book early. Flight tickets tend to be the cheapest when they are first released, normally about a year before the departure date. So, check online as soon as the flights you want become available. If you miss the cheapest time, you can still find lower-priced tickets as the flight date approaches.
6
Search for flights on the go.
To get the best flight booking experience on the go, download Trip.com and search for cheap flight tickets from Heraklion to Prague to get exclusive deals for you.

Flight Info | Heraklion to Prague

Cheapest direct flight price€54
Cheapest return ticket price€196
Off-season for travelFebruary
Peak season for travelNovember
Flight distance1,863.63 km
Average flight time2 hours 50 minutes
Popular airlineAegean Airlines

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