App
Customer Support
EUR
Find Bookings
Worldwide Coverage
Worldwide Coverage
Flights to over 5,000 cities
One-stop Service Guarantee
One-stop Service Guarantee
Price guaranteed upon confirmed payment, booking guaranteed once tickets issued
Secure Payment
Secure Payment
Convenient & reliable booking and payment system

Cheap flight deals from San Diego to El Nido Starting at €1,415

Discover our range of affordable one-way and round-trip flights from San Diego to El Nido and kick-start your next adventure today!

  • Round-trip
      • SAN08:00
        43h 35m
        2 stops
        ENI19:35
        Sat, Mar 8|San Diego - El Nido|Alaska Airlines
        ENI07:45
        31h 14m
        2 stops
        SAN23:59
        Fri, Mar 14|El Nido - San Diego|Island Air
        €1,415€2,116
        33% OFF
        33% OFF
        €2,116€1,415

        Choose Alaska Airlines flights from San Diego to El Nido. The one-way connecting flight with Alaska Airlines departs from San Diego International Airport on Sat, Mar 8-Fri, Mar 14, arriving at El Nido ENI Airport. One-way Prices start from €1,415 including taxes and charges.

      • SAN06:15
        45h 20m
        2 stops
        ENI19:35
        Sun, Mar 2|San Diego - El Nido|Alaska Airlines
        ENI21:10
        51h 1m
        2 stops
        SAN09:11
        Sat, Mar 8|El Nido - San Diego|Island Air
        €1,505€2,116
        28% OFF
        28% OFF
        €2,116€1,505

        Choose Alaska Airlines flights from San Diego to El Nido. The one-way connecting flight with Alaska Airlines departs from San Diego International Airport on Sun, Mar 2-Sat, Mar 8, arriving at El Nido ENI Airport. One-way Prices start from €1,505 including taxes and charges.

      • SAN17:27
        35h 8m
        2 stops
        ENI19:35
        Sat, Mar 15|San Diego - El Nido|Alaska Airlines
        ENI07:45
        40h 26m
        2 stops
        SAN09:11
        Sat, Mar 22|El Nido - San Diego|Island Air
        €1,534€2,116
        28% OFF
        28% OFF
        €2,116€1,534

        Choose Alaska Airlines flights from San Diego to El Nido. The one-way connecting flight with Alaska Airlines departs from San Diego International Airport on Sat, Mar 15-Sat, Mar 22, arriving at El Nido ENI Airport. One-way Prices start from €1,534 including taxes and charges.

      • SAN06:15
        45h 20m
        2 stops
        ENI19:35
        Mon, Feb 24|San Diego - El Nido|Alaska Airlines
        ENI07:45
        32h 14m
        2 stops
        SAN23:59
        Sun, Mar 2|El Nido - San Diego|Island Air
        €1,641
        €1,641

        Choose Alaska Airlines flights from San Diego to El Nido. The one-way connecting flight with Alaska Airlines departs from San Diego International Airport on Mon, Feb 24-Sun, Mar 2, arriving at El Nido ENI Airport. One-way Prices start from €1,641 including taxes and charges.

      • SAN19:24
        33h 11m
        2 stops
        ENI19:35
        Mon, Mar 17|San Diego - El Nido|United Airlines
        ENI21:10
        38h 13m
        2 stops
        SAN20:23
        Fri, Mar 21|El Nido - San Diego|Island Air
        €1,666
        €1,666

        Choose United Airlines flights from San Diego to El Nido. The one-way connecting flight with United Airlines departs from San Diego International Airport on Mon, Mar 17-Fri, Mar 21, arriving at El Nido ENI Airport. One-way Prices start from €1,666 including taxes and charges.

      • SAN17:25
        34h 10m
        2 stops
        ENI19:35
        Wed, Feb 19|San Diego - El Nido|United Airlines
        ENI21:10
        28h 54m
        2 stops
        SAN10:04
        Tue, Feb 25|El Nido - San Diego|Island Air
        €1,693
        €1,693

        Choose United Airlines flights from San Diego to El Nido. The one-way connecting flight with United Airlines departs from San Diego International Airport on Wed, Feb 19-Tue, Feb 25, arriving at El Nido ENI Airport. One-way Prices start from €1,693 including taxes and charges.

      • SAN15:58
        35h 37m
        2 stops
        ENI19:35
        Thu, Feb 20|San Diego - El Nido|Alaska Airlines
        ENI07:45
        31h 31m
        2 stops
        SAN23:16
        Thu, Feb 27|El Nido - San Diego|Island Air
        €1,696
        €1,696

        Choose Alaska Airlines flights from San Diego to El Nido. The one-way connecting flight with Alaska Airlines departs from San Diego International Airport on Thu, Feb 20-Thu, Feb 27, arriving at El Nido ENI Airport. One-way Prices start from €1,696 including taxes and charges.

      • SAN18:59
        33h 36m
        2 stops
        ENI19:35
        Thu, Mar 13|San Diego - El Nido|Alaska Airlines
        ENI21:10
        38h 35m
        2 stops
        SAN20:45
        Wed, Mar 19|El Nido - San Diego|Island Air
        €1,722
        €1,722

        Choose Alaska Airlines flights from San Diego to El Nido. The one-way connecting flight with Alaska Airlines departs from San Diego International Airport on Thu, Mar 13-Wed, Mar 19, arriving at El Nido ENI Airport. One-way Prices start from €1,722 including taxes and charges.

      • SAN19:19
        32h 16m
        2 stops
        ENI19:35
        Mon, Feb 24|San Diego - El Nido|United Airlines
        ENI21:10
        33h 49m
        2 stops
        SAN14:59
        Fri, Feb 28|El Nido - San Diego|Island Air
        €1,732
        €1,732

        Choose United Airlines flights from San Diego to El Nido. The one-way connecting flight with United Airlines departs from San Diego International Airport on Mon, Feb 24-Fri, Feb 28, arriving at El Nido ENI Airport. One-way Prices start from €1,732 including taxes and charges.

      • SAN07:00
        32h 45m
        2 stops
        ENI06:45
        Sat, Mar 15|San Diego - El Nido|Hawaiian Airlines
        ENI07:45
        40h 26m
        2 stops
        SAN09:11
        Sat, Mar 22|El Nido - San Diego|Island Air
        €1,735
        €1,735

        Choose Hawaiian Airlines flights from San Diego to El Nido. The one-way connecting flight with Hawaiian Airlines departs from San Diego International Airport on Sat, Mar 15-Sat, Mar 22, arriving at El Nido ENI Airport. One-way Prices start from €1,735 including taxes and charges.

      • SAN01:00 pm
        3h 5m
        Nonstop
        ENI02:00 pm
        Fri, Feb 21|San Diego - El Nido|Alaska Airlines
        Find More Flights
        Find More Flights

Crossed out prices are calculated based on the average price of the corresponding route on Trip.com.

San Diego to El Nido flight time & flight schedules

Flight info.
Departure
Arrival
Weekly Schedule

  1. HA015

    Hawaiian Airlines

    07:00

    SAN

    7.3h

    11:20

    HNL

    SMTWTFS
    Search

  2. PR101

    Philippine Airlines

    12:55

    HNL

    11.3h

    18:15

    MNL

    -M-WTFS

  3. T6106

    Island Air

    04:30

    MNL

    1.5h

    06:00

    ENI

    SMTWTFS

  4. AS2058

    Alaska Airlines

    10:25

    SAN

    1.7h

    12:06

    SFO

    SMTWTFS
    Search

  5. PR105

    Philippine Airlines

    23:55

    SFO

    14.6h

    05:30

    MNL

    SMTWTFS

  6. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  7. JL065

    Japan Airlines

    13:05

    SAN

    11.7h

    16:45

    NRT

    -MT-T-S
    Search

  8. JL745

    Japan Airlines

    18:00

    NRT

    4.7h

    21:40

    MNL

    SMTWTFS

  9. T6106

    Island Air

    04:30

    MNL

    1.5h

    06:00

    ENI

    SMTWTFS

  10. AS3473

    Alaska Airlines

    14:55

    SAN

    1.7h

    16:35

    SFO

    S--WT-S
    Search

  11. PR105

    Philippine Airlines

    23:55

    SFO

    14.6h

    05:30

    MNL

    SMTWTFS

  12. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  13. UA2117

    United Airlines

    16:01

    SAN

    1.8h

    17:47

    SFO

    SMTWTFS
    Search

  14. UA189

    United Airlines

    23:40

    SFO

    15.2h

    06:50

    MNL

    SMTWTFS

  15. T6142

    Island Air

    14:05

    MNL

    1.4h

    15:30

    ENI

    SMTWTFS

  16. AS3423

    Alaska Airlines

    17:00

    SAN

    1.7h

    18:43

    SFO

    SMT-TF-
    Search

  17. PR105

    Philippine Airlines

    23:55

    SFO

    14.6h

    05:30

    MNL

    SMTWTFS

  18. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  19. UA1849

    United Airlines

    17:25

    SAN

    1.8h

    19:11

    SFO

    SMTWTFS
    Search

  20. UA189

    United Airlines

    23:40

    SFO

    15.2h

    06:50

    MNL

    SMTWTFS

  21. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  22. AS3457

    Alaska Airlines

    18:59

    SAN

    1.7h

    20:42

    SFO

    ---W--S
    Search

  23. PR105

    Philippine Airlines

    23:55

    SFO

    14.6h

    05:30

    MNL

    SMTWTFS

  24. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  25. UA505

    United Airlines

    19:27

    SAN

    1.6h

    21:05

    SFO

    SMTWTFS
    Search

  26. UA189

    United Airlines

    23:40

    SFO

    15.2h

    06:50

    MNL

    SMTWTFS

  27. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS

  28. AS1005

    Alaska Airlines

    19:45

    SAN

    1.8h

    21:30

    SFO

    SMTWTFS
    Search

  29. UA189

    United Airlines

    23:40

    SFO

    15.2h

    06:50

    MNL

    SMTWTFS

  30. T6172

    Island Air

    18:05

    MNL

    1.5h

    19:35

    ENI

    SMTWTFS
Find more flights and airlines

When is the cheapest time to fly from San Diego to El Nido?

Explore the best time to buy affordable tickets to El Nido with our price trend chart, which predicts how flight prices will change in the coming weeks from previous data.

Displayed prices are calculated based on the cheapest average weekly prices of the corresponding route on Trip.com.

Frequently Asked Questions

  • When are flight tickets from San Diego (SAN) to El Nido (ENI) the cheapest?

    Airlines adjust prices for flights from San Diego to El Nido based on the date and time of your booking. By analyzing data from all airlines, on Trip.com, you can find the lowest flight prices on Tuesdays, Wednesdays, and Saturdays.

  • How much do flights from San Diego (SAN) to El Nido (ENI) cost?

    According to Trip.com's data, the lowest price is around €2,132.

  • What is the transportation method from the main airport to downtown in El Nido?

    • The distance from El Nido Airport to downtown is about 5 km, by taxi about 20 minutes.

  • How many airports are there in El Nido (ENI)?

    There are 1 airport(s) near El Nido (ENI): El Nido Airport.

How to find a cheap flight from San Diego to El Nido

If you leave it until the last minute and forget to check some of the key information when booking tickets, prices can often end up skyrocketing. Below, you can find our top tips for getting the best value flights – from changing dates to chasing deals, there are plenty ways to keep your next trip affordable.
1
Book Early
Once prices are gone, they're gone. Lock in deals while you can!
2
Compare Flight Prices
Compare prices on travel agency and airline websites.
3
Look Out for Deals
Check airline and travel agency websites for latest flight deals
4
Check One-way Fares
Buying two cheap one-way flights can sometimes be a better deal than a round-trip.
5
Try Different Dates
Flying during the week, early in the morning, or late at night can help save money.
6
Use the Trip.com App
Save up to £10 per person when booking your flights on Trip.com

Flight Info | San Diego to El Nido

Off-season for travelJanuary
Peak season for travelDecember
Flight distance12,280.13 km
Popular airlineAlaska Airlines

Contact Us

About

Other Services

Payment Methods
Our Partners
Copyright © 2025 Trip.com Travel Singapore Pte. Ltd. All rights reserved
Site Operator: Trip.com Travel Singapore Pte. Ltd.