Marathon

Boutique Hotels in Marathon

Book your stay at Marathon’s most stylish Boutique hotels.

Swipe down to view more
Filter by:
Hotel Star Rating
≤2345
Guest Rating
9+8+7+6+

Top Boutique Hotels Marathon

Live in style at Marathon's Boutique gems.
Most Booked
Lowest price
Closest to downtown
Highest Rated
99+
Hotels in Marathon
Immerse yourself in an active vacation at Fairfield Inn & Suites Marathon Florida Keys. Stay at the top hotel in the Middle Keys — halfway between Islamorada and Key West — where you’ll find world-class fishing right outside your door. Launch an abundance of water adventures from the onsite Marina Marathon at Tarpon Creek: rent Jet skis, kayaks, and paddleboards; go snorkeling, parasailing, and charter fishing; take a sunset tour. On land, indulge in hand-crafted cocktails and local entertainment at Sparky’s Landing Tiki Bar and Restaurant. Other amenities include a well-equipped fitness center and two outdoor heated pools. Rest easy in a spacious, comfortable guest room with a view, then enjoy free breakfast every morning. This Fairfield Inn & Suites is your key to an unforgettable tropical getaway.

"The facility was better than expected and very clean and quiet (on the third floor). There is an elevator. Huge TV, but although other services were offered, you had to input your PW information, (which I wasn't willing to do), so you're stuck with regular cable stations, which were fine with us. Very cold A/C. Refrigerator was a little different and instructions not clear, but usable. Breakfast was provided and ample. Restaurant for dining within walking distance across the street (if you know how to dodge traffic). It's a good place to stay and I would stay again."
Very Good
118 reviews
8.5/10
1 night
From THB 5,669
Check availability
99+
Hotels in Marathon
With a stay at Tranquility Bay Beachfront Hotel and Resort in Marathon, you'll be on the waterfront, within a 10-minute drive of Sombrero Beach and Boot Key Harbor. This beach hotel is 0.2 mi (0.3 km) from The Turtle Hospital and 0.2 mi (0.3 km) from Shady Palm Art Gallery. Relax and unwind with massages, body treatments, and facials. After dipping into one of the 3 outdoor pools, you can spend some time at the private beach. Additional features at this hotel include complimentary wireless internet access and a banquet hall. Enjoy a satisfying meal at TJs Tiki Bar serving guests of Tranquility Bay Beachfront Hotel and Resort. Relax with your favorite drink at the bar/lounge or the beach bar. To-go breakfasts are available daily from 8:00 AM to 11:30 AM for a fee. The front desk is staffed during limited hours. Free self parking is available onsite. Stay in one of 103 guestrooms featuring LED televisions. Your pillowtop bed comes with premium bedding. Rooms have private furnished balconies. Complimentary wireless internet access keeps you connected, and cable programming is available for your entertainment. Bathrooms have complimentary toiletries and hair dryers.

"The environment is very nice! The room is very clean. The service is very good👍"
Very Good
103 reviews
8.7/10
1 night
From THB 7,484
Check availability
99+
Hotels in Marathon
Daily Resort Charge includes: WiFi; bicycle rental for 2; beach chairs, umbrellas and coolers; daily cocktail at the front desk; recreational equipment including pool floats, fire pits, hammocks & cornhole; daily live music; seasonal resort amenities. Ideally located between Key Largo and Key West, our Marathon resort is just minutes from The Old Seven Mile Bridge, The Turtle Hospital, Sombrero Beach, and Bahia Honda State Park. Whether you're seeking a romantic getaway, an adventurous retreat, or a serene island escape, Faro Blanco delivers refined comfort and authentic Florida Keys charm. Daily Resort Charge includes WiFi; bicycle rental for 2; beach chairs, umbrellas and coolers; daily cocktail at the front desk; recreational equipment including pool floats, volleyball, ping pong tables & cornhole; daily live music; seasonal resort amenities.

"Great location, beautiful and well kept facility, places to relax and places for kids to have fun. Restaurant on-site is fantastic and views from the marina are serine. Room was excellent and had more than expected. Close to restaurants, groceries and many other things."
Very Good
108 reviews
8.7/10
1 night
From THB 5,360
Check availability
44
Hotel near Key Colony,Marathon
For a limited time only, receive 10% off 7+ night booking! Our newly completed addition makes this home a 3/3 with 37' dock. Our Tiki Hut has a conversation sitting area with a fire table, dining table for 6, and 65" smart TV, ceiling fans, and edison lighting. The outdoor propane grill is located outside of the Tiki Hut. There is also boat trailer parking. Cabana Club Membership included. Our Bungalow now has 2 Master Bedrooms with full en-suite bathrooms and king-sized beds, along with our nicely appointed 3rd bedroom with queen bed and an additional 3rd bathroom. All bedrooms have their own ceiling fan, super quiet mini split AC, full size dresser, mirrors, and nightstands, One bedroom holds the washer and dryer.The waterside view through the two 8' glass sliders in the recently enlarged living room and the bright additions to the decor will be sure to please you for your relaxing vacation and family gatherings! This 3 bedroom 3 bath home offers all new super quiet mini split air conditioners, a queen sofa sleeper; 2 comfy La-Z Boy recliners; the new dining table has a built in leaf that can easily seat 8, ceiling fans, new Smart TV’s; DVD player, free wifi and USB ports throughout the house.The beautiful enlarged kitchen now has a new island, stainless steel appliances and is well supplied with all dishes, glassware, utensils, Keurig coffee maker and Cuisinart drip coffee maker, beverage center, Cuisinart toaster oven, microwave, refrigerator, dishwasher, mixer, blender, and crock pot. The backyard now has a large tiki hut for your relaxation as you enjoy the canal view along with a 65" smart TV, ceiling fans, fire table and outdoor grill. Please do not bring your pets as the home is not pet friendly.You can enjoy waterside lounging at the home along with a membership to the Cabana Club which includes a pool, beach, gift shop and snack bar. There is a total of 37’ of dockage at the home with a fish cleaning table. This residence is on a wide and deep canal with quick access to the Gulf or the Atlantic Ocean. Key Colony Beach is called "The Gem of the Florida Keys" located at mile marker 53.5 on US 1 and has a 9-hole par-3 golf course, Sunset Beach, Tennis courts, Pickleball, Basketball court, Playground and is ideal for fishing and boating activities. There are many restaurants, charter fishing fleets, marina, boat rentals, clothing store, gift shop, dive and tackle shop, and liquor store. MAKE YOUR VACATION FANTASTIC AT SALTY'S PARADISE BUNGALOW IN THE FLORIDA KEYS!About pets:No pets allowed.About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 26.About events:No events allowed.
Outstanding
13 reviews
10/10
Check availability
18
Hotels in Marathon
**NEW HOME UPDATES** Relax with the whole family at Coral Lagoon Resort which is located in the heart of Marathon. This single family 3 bedroom/2.5 bath canal waterfront home is fully stocked and perfect for families or groups to enjoy island living! From ocean access minutes from our 38ft. boat slip to relaxing poolside in the community pool, this home has everything guests need for a wonderful stay. Brand new kitchen, new furniture, new appliances and renovated bathrooms!g🚧BOAT SLIP UNAVAILABLE- DELAYED construction THRU APRIL 2026 🚧The Boat House Marina requires all renters who will be using the boat slip to register with them and show proof of insurance. Registration fee is $50. The marina also offers other services such as on-site trailer parking, boat ramp usage, fish cleaning stations and other services for additional fees. Please contact them directly to register. Only 1 vessel, regardless of size, allowed per slip. NO Trailer parking permitted in any common areas or in front of home.About pets:Pets allowed: dogs less than 20 lbs per pet (limit one pet total).Pet registration form must be filled out..About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 18.About events:No events allowed.
Outstanding
5 reviews
10/10
Check availability
24
Hotels in Marathon
Thank you for taking the time to learn about Villa 14 at Coral Lagoon Resort & Marina. Built in 2007, this two story 3 BR /2.5 BA is simply stunning and a MUST stay for your next vacation. Professionally decorated. With only the finest of linens, pillows, and bedding this is the most comfortable rental in the Keys. Residence also has a 17' x 50' boat slip located at our onsite marina (slip 48) which includes full services such as boat ramp, fuel, water, ice, and power. The lower level includes a large floor plan layout with a full service kitchen open to the dining and family room. Kitchen includes state of the art stainless steel appliances and granite countertops. All rooms enjoy a water view. The powder bathroom is conveniently located downstairs for guests. A pair of french doors at the rear of residence open to a large covered patio and the perfect retreat for your morning coffee.The second level includes 3 bedrooms, 2 additional bathrooms and 2 private balconies. The master bedroom includes a private bathroom with walk - in shower, linen closet, and granite vanity tops. The room has two separate his and hers closets, cable TV, vaulted ceilings, and access to private balcony overlooking the waterway.Second bedroom has a queen size bed, closet, vaulted ceilings, and a private balcony. Third bedroom has two (2) twin beds, closet, and vaulted ceilings. These two rooms share a bathroom off the hallway including tub / shower and granite vanity.The residence has a private nearby heated pool great for the family and kids. There are numerous nearby amenities such as......local attractions, restaurants, drug stores, groceries, and bars. Our location is ideal for access to the ocean or the bay side (via Vaca Cut). Within minutes of leaving our marina you can be in the ocean or on the bay. This is a privately managed / operated rental by the Owners. We appreciate and welcome any feedback. We look forward to your stay, please email us with any questions you may have. Thank You!About pets:No pets allowed.About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About customRules:No BBQ allowed on exterior patio due to HOA regulations and local fire code rules.Please keep all fish outside in coolers. Please no fish in the refrigerator as this causes potential odors difficult to remove for other guests,Please make certain you boat (if applicable) is docked IN the ASSIGNED boat slip.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 25.About events:No events allowed.
Outstanding
22 reviews
10/10
Check availability
29
Hotels in Marathon
New Listing - Family Reunion Large Vacation Rental 6 bedrooms 5 baths steps to Sombrero Beach. 6 bedrooms (5 King size beds in 5 bedrooms) the last bedroom has 2 bunkbed sets (2 full size beds on the bottom and 2 single beds on the top bunks) Welcome to the world of azure blue waters, tropical warm weather gently ocean breezes and the island sun of the Florida Keys. The Florida Keys is one of the most sought after destinations for anyone wanting to get-away from the mainland and relax or go fishing. Once you arrive you’ll feel a laid-back “Island Time” atmosphere where time seems to stand still and everyone feels more relaxed.This property is located in a highly desired community only minutes away from the grocery stores, drug stores and liquor stores and two walking blocks to Sombrero Beach. Publix is 2.5 miles away and will deliver. Great seafood restaurants and Tiki bars are close. But our close proximity to the most sought after beach is what makes people want to book this house. Sombrero Beach!For fisherman, we have an ice machine, fish cutting table and deep water boat dock! Our family friendly accommodations keep many families coming back year after year since we specialize in providing amenities no other vacation rental offers. Such as Baby equipment and items parents want to bring with them while on vacation. Especially, parents with babies and toddlers; which need more equipment, like cribs, playpens, special dishes, sippy cups and diaper pails. Nightlights, step-stools, car seats, strollers, high-chairs, bibs etc… And of course beach toys, pool toys, beach chairs, umbrella, books, developmental toys and games. Word of mouth keeps us growing thanks to the families with children who have stayed at our Family Friendly vacation rentals. That is why we’re buying our third vacation rental home here in the Florida Keys.• Spacious accommodations with over 5,500 sq. ft. luxury living and a 90’dock for your boating pleasure in vacation paradise. This 6 bedroom, 5 baths home is just a few steps away from the most famous of the best beaches in the Florida Keys – Sombrero Beach.• Scenic deep water canal with private extra long boat dock. Saltwater swimming pool and hot tub with huge outdoor commercial kitchen and a spacious patio and comfortable chaise lounge chairs throughout with hammocks. Great place to kickback and soak up some sun!• Our other property on Sombrero Beach Road is rated 5 Stars, in VRBO, thus we feel you will inherit the same quality and more from our newest property acquisition. We have plenty of off-street parking as the property sits on 2/3 of an acre ---so bring your boat/trailer and enjoy to sun and surf of the keys.1st. Floor:• Recreational room with Regulation Pool Table, comfortable sitting area and large bar with sink, refrigerator and microwave.•Here is the bedroom layout:1. First floor: 1 master bedroom with king size bed with ensuite bath and walk in closet2. First floor: 1 bedroom with king size bed (with crib) the crib stays in this bedroom can't be moved. bed and bathroom3. First floor: 1 bedroom with king size bed and shared bathroom4. First floor: 4 beds - 2 bunkbeds - top beds (twin size) bottom beds (full size)5. Second floor: 1 master bedroom king size bed with ensuite bath and walk in closet (with crib) the crib stays in this bedroom can't be moved. bed and bathroom6. Second floor: 1 bedroom with king size bed and shared bathroomWe have two extra roll-way beds (twins).2nd Floor:• Main Living room with a large well appointed kitchen overlooking the bar with stools. Large formal dining room and separate card table.• 2 dining room tables and chairs and outdoor dining tables• 50” flat screen TV. Overstuffed comfortable living room furniture. Poker table with 6 chairs• All levels have wrap around decks with seating and dining outdoors.• On the first floor we also added a foosball table and an air hockey table.• Everyone that has come so far says it’s great and packed with tons of things to do that they don’t want to leave.• We also have beach volleyball net• We just installed an outdoor kitchen (commercial) Chef’s dream.About pets:Pets allowed: dogs less than 20 lbs per pet (limit one pet total).About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About customRules:No Early Arrivals and You must Leave by 10 AM for our cleaning crew! Thanks..No Fireworks allowed on property, No Tiki Torches, No Deep Fryers for Turkeys, No Silly String (Hard to clean up inside or outside), No Drugs!,NO firearms, NO Lithium Batteries Due to battery fire, lithium batteries prohibited. Includes storage, charging, or use of lithium-powered devices..About checkIn:Check in after 4:30 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 26.About events:No events allowed.
Outstanding
18 reviews
10/10
Check availability
68
Hotels in Marathon
Welcome to Sombrero Siesta, your ultimate tropical getaway in the heart of the Florida Keys! This luxurious canal-front retreat offers the perfect blend of relaxation and adventure, featuring a heated pool, serene waterfront views, and all the amenities you need for an unforgettable stay.Your Private OasisStep into a spacious, beautifully designed home with coastal-inspired decor and open living spaces. The large living room invites you to unwind with plush seating, a flat-screen TV, and plenty of natural light pouring in through large windows. The fully equipped kitchen is a chef’s dream, complete with modern appliances, ample counter space, and all the essentials for preparing delicious meals. Dine indoors or head outside to enjoy your meals al fresco by the water.Outdoor BlissThe outdoor area is the true highlight of Sombrero Siesta. Take a dip in the heated pool, perfect for a refreshing swim during the day or a relaxing soak under the stars. Lounge on comfortable chairs by the pool or sip your favorite drink on the shaded patio while enjoying the peaceful canal views. Boating enthusiasts will appreciate the private dock, where you can tie up your vessel or simply enjoy watching the boats go by. The canal provides easy access to open waters for fishing, snorkeling, or exploring the beautiful nearby islands.Cozy BedroomsThis home offers multiple bedrooms, each thoughtfully furnished for your comfort. The master suite boasts a king-sized bed, an en-suite bathroom, and direct access to the outdoor area, so you can wake up to stunning views every morning. Additional bedrooms are perfect for family or friends, offering queen or twin beds and plenty of space to relax after a day of adventure.Prime LocationSombrero Siesta is located in a quiet, family-friendly neighborhood in Marathon, just minutes away from local attractions. You’re a short drive from Sombrero Beach, one of the Keys' most picturesque beaches, where you can bask in the sun, swim, or enjoy a picnic. Nearby, you’ll find excellent dining options, unique shops, and activities like fishing charters, diving tours, and eco-excursions.Why You’ll Love ItHeated pool for year-round enjoymentStunning canal views and private dockFully equipped kitchen and spacious living areasConvenient access to beaches, dining, and attractionsIdeal for families, groups, or a romantic retreatWhether you’re looking to unwind in your private oasis or explore everything the Keys have to offer, Sombrero Siesta is the perfect destination. Book your stay today and experience the magic of this waterfront paradise!Living Area:Step into a warm and inviting living space featuring a comfortable and stylish sofa, perfect for relaxing with family or friends. The living area offers direct access to the balcony, where you can unwind while enjoying fresh air and serene views.Kitchen:The kitchen is fully equipped with modern appliances, including a refrigerator, stove, microwave, and dishwasher. It boasts sturdy white cupboards that offer plenty of storage space, making it a functional and convenient spot to prepare meals.Dining Area:Enjoy meals together in the dining area, which includes a spacious 6-seater dining table for formal gatherings. For casual dining, there’s a 3-seater dining counter that adds flexibility and style.Bedrooms:Bedroom 1: Features a luxurious king-size bed and an ensuite bathroom for added privacy and comfort.Bedroom 2: Furnished with a cozy queen-size bed, perfect for a restful night’s sleep.Bedroom 3: Offers another king-size bed, providing ample space and comfort.Bedroom 4: Comes with two twin beds and its own ensuite bathroom, ideal for guests or children.Bathrooms:Bathroom 1 (Ensuite to Bedroom 1): Includes a shower and toilet, offering convenience and privacy.Bathroom 2: Features a combination tub/shower and toilet, making it versatile for different preferences.Bathroom 3 (Ensuite to Bedroom 4): Equipped with a combination tub/shower and toilet, perfect for guests staying in Bedroom 4.Laundry Area:A dedicated laundry area is equipped with a complete washer and dryer set, making it easy to keep your clothes fresh during your stay.Outdoor Amenities:Pool: Relax and soak up the Florida sunshine by the beautiful outdoor pool. The pool area offers stunning views of the canal, creating a tranquil oasis.Private Dock: The property features a private dock where you can enjoy the peaceful surroundings and scenic views of the canal. It’s perfect for fishing, kayaking, or simply taking in the serene waterfront atmosphere.This property combines comfort, style, and convenience, making it an ideal choice for your stay. Whether you're enjoying the modern indoor amenities or the picturesque outdoor spaces, this home provides the perfect setting for relaxation and memorable moments.Please note: To ensure the best experience for our guests, certain amenities and services may incur modest additional charges. We strive to keep these costs minimal and transparent:* Early Check-in if Available: $50;* Late Check-out if Available: $50;* Pet Fees: $100 per Pet, 3 Pet Max;* Pool/Spa Heating Fee: $25 per night;Please note that due to the limitations of the electric pool heater, the pool temperature can only be increased by 15-20 degrees Fahrenheit above the coldest outdoor temperature of the day. For example, if the coldest temperature of the day is 50°F, the maximum pool temperature will be approximately 65-70°F. We appreciate your understanding and hope you enjoy your stay!* Shipping Lost & Found: $50 + Shipping Cost;* Additional Guest Fee Above 8: $15 per Night;* We kindly ask that our guests take care of the property during their stay. If additional cleaning is required beyond our standard service, an extra cleaning fee may apply. We appreciate your understanding and cooperation in helping us maintain a beautiful space for everyone to enjoy.About pets:Pets allowed: dogs less than 50 lbs per pet (limit 2 pets total).About children:Children allowed: ages 0-17.About customRules:Our base rates are valid for up to 8 guests. After 8 guests, there is an additional charge of $15 per guest per night..After the reservation is made, a rental agreement and credit card authorization must be signed for Emperor Rentals LLC. * Pet fee $100 per pet/stay.,* We have a "FIRM" VRBO cancellation policy on this listing, please read over the cancellation policy prior to booking. Pool/spa heat: $25 per night..About smoking:Smoking is not permitted.About events:No events allowed.
Outstanding
15 reviews
10/10
Check availability
36
Hotels in Marathon
NEW-“2 homes in 1”- PRIVATE-WATERFRONT HOME -only a 5 minute walk to the beach Located on a large, deep canal and is perfect for 2 families or a large group with an Abundance of sleeping options!! 2 SEPARATE, PRIVATE LIVING SPACES. (Upstairs/downstairs)2 kitchens-2 living rooms-2 lanai’s!NEW Dock-NEW Pool/Hot tub-All NEW Interior! There are 2 levels that are not connected making it private and seemingly separate.5 bedrooms/3 baths and decorated in an uplifting, yet peaceful style!The upper level has 2 king bedrooms, 1 room with double queens, full kitchen w/large ice-maker, spacious living room, and 2 full baths. The lower level has 2 more bedrooms, 1 with king bed and the other with 2 full size beds, small living area, full kitchen, living room, and a large full bath.Smart TV’s in every room! 2 sets of new large volume Washer/Dryers.So much hang-out space….There is a large screened in porch on the upper level. The pool area has an “open to the sky” large space with a dining table and lots of comfy furniture to lounge, eat and socialize! The new custom pool has a deep- blue colored tile with an easy-to-operate attached hot tub! There is abundant space for parking trailers/cars in the front yard. Wifi, bikes, Corn-hole and a large gas grill are for your use. This home is close to a beautiful sand bar and “coffins patch” which is a protected reef that's known for snorkeling.This home is better than words can express it! Come and see for yourself! We are the hostess’s with the Most-est! About pets:No pets allowed.About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 25.About events:No events allowed.
Outstanding
19 reviews
10/10
Check availability
58
Hotels in Marathon
Have you ever gotten to your vacation rental and said to yourself, man I wish we had rented THAT place over there! Well the YellowTail Villa is THAT place! It's the location, the incredible amenities, the amazing island decor and decorations and of course the amazing VIEWS! We've got it all!150 incredible glowing FIVE STAR REVIEWS says it all! My reviews are ALL recent from last week, the week before, and the week before that. Not 4 months ago or longer like you'll see on many other properties. The reviews tell the story about this amazing stand alone single family property with a private boat slip, elevator, tiki bar, hot tub, moon deck and more! Immaculately decorated from top to bottom, you and your guests will feel extra special staying here.I play NO games & NO tricks with our pics or location like some other homeowners try to pull over on you. My pics are all current and show you EXACTLY where our villa is located and how amazing it is inside and out! I take a lot of pride in my dream Florida Keys home. I care deeply about your experience and work hard every day to ensure our guests an incredible vacation in paradise! Just read my reviews to see what others who have stayed here have to say.I am at your service!In friendship,Matt LeeAbout pets:No pets allowed.About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About customRules:No Pets...If a pet is found in residence, you will be evicted without refund.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 25.About events:No events allowed.
Check availability
Show More Boutique Hotels in Marathon

Frequently Asked Questions

What are the best places to stay in Marathon?

Some top places to stay in Marathon are near popular attractions like Crane Point Hammock and Turtle Hospital—so you can quickly get to top landmarks and amenities you need.

What are the best hotels in Marathon near Crane Point Hammock?

Some standout hotels in Marathon close to Crane Point Hammock include Tropical Cottages (price from THB 4,000), Yacht Haven (price from THB 8,934) and Banana Bay Resort & Marina (price from THB 4,702), all within easy walking or transit distance of Crane Point Hammock, perfect for travelers wanting to explore the landmark and its surroundings.

How to get good deals on hotels in Marathon?

Find the best hotel deals and promotions on Trip.com, available year-round for both first-time and loyal users. Please check the promotions page to see what promotions are available now on Trip.com.